VLSI layouts and DNA physical mappings

We show that an important problem ($k$-ICG) in computational biology is equivalent to a colored version of a well-known graph layout problem ($k$-CVS).Comment: 7 page

The complexity of broadcasting in bounded-degree networks

Broadcasting concerns the dissemination of a message originating at one node of a network to all other nodes. This task is accomplished by placing a series of calls over the communication lines of the network between neighboring nodes, where each call requires a unit of time and a call can involve only two nodes. We show that for bounded-degree networks determining the minimum broadcast time from an originating node remains NP-complete.Comment: 6 page

New results for the degree/diameter problem

The results of computer searches for large graphs with given (small) degree and diameter are presented. The new graphs are Cayley graphs of semidirect products of cyclic groups and related groups. One fundamental use of our ``dense graphs'' is in the design of efficient communication network topologies.Comment: 15 page

A simple linear-time algorithm for finding path-decompositions of small width

We described a simple algorithm running in linear time for each fixed constant $k$, that either establishes that the pathwidth of a graph $G$ is greater than $k$, or finds a path-decomposition of $G$ of width at most $O(2^{k})$. This provides a simple proof of the result by Bodlaender that many families of graphs of bounded pathwidth can be recognized in linear time.Comment: 9 page

Obstructions to within a few vertices or edges of acyclic

Finite obstruction sets for lower ideals in the minor order are guaranteed to exist by the Graph Minor Theorem. It has been known for several years that, in principle, obstruction sets can be mechanically computed for most natural lower ideals. In this paper, we describe a general-purpose method for finding obstructions by using a bounded treewidth (or pathwidth) search. We illustrate this approach by characterizing certain families of cycle-cover graphs based on the two well-known problems: $k$-{\sc Feedback Vertex Set} and $k$-{\sc Feedback Edge Set}. Our search is based on a number of algorithmic strategies by which large constants can be mitigated, including a randomized strategy for obtaining proofs of minimality.Comment: 16 page

Computing A Glimpse of Randomness

A Chaitin Omega number is the halting probability of a universal Chaitin (self-delimiting Turing) machine. Every Omega number is both computably enumerable (the limit of a computable, increasing, converging sequence of rationals) and random (its binary expansion is an algorithmic random sequence). In particular, every Omega number is strongly non-computable. The aim of this paper is to describe a procedure, which combines Java programming and mathematical proofs, for computing the exact values of the first 64 bits of a Chaitin Omega: 0000001000000100000110001000011010001111110010111011101000010000. Full description of programs and proofs will be given elsewhere.Comment: 16 pages; Experimental Mathematics (accepted